Holdings: Computational methods in analysis of gene regulation and protein interactions /

Computational methods in analysis of gene regulation and protein interactions / Ron Shamir.

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Bibliographic Details
Other Authors:	Shamir, Ron (Speaker)
Format:	Streaming video
Language:	English
Published:	London : Henry Stewart Talks, 2012.
Series:	Henry Stewart talks. Biomedical & life sciences collection. Protein homeostasis.
Subjects:	Biological models. Computational biology. Protein-protein interactions > Data processing Proteomics. Algorithms. Computational Biology > methods. Gene Regulatory Networks. Protein Interaction Mapping. Systems Biology.
Online Access:	Henry Stewart Talks: Biomedical & Life Sciences Series

Table of Contents:

Contents: Finding regulatory motifs
Finding motifs using target sets of promoters
Problem definition
The Amadeus motif finding algorithm
Architecture, benchmark results and global analysis
Finding transcriptional programs and their regulatory motifs
Problem definition
The Allegro software for recovering transcriptional program
Results on yeast osmotic shock expression profiles
Recovering microRNA binding motifs from 3' UTRs using stem cell expression profiles
Discovering a novel motif pair in C. elegans
Utilizing network information
Using expression and protein interaction data
Problem definition and the Matisse algorithm
Demonstration of Matisse on yeast osmotic shock data
Comparison of Matisse to other algorithms
Demonstration of Matisse on human stem cell data
The pluripotency network
Using expression and protein interaction data with interaction confidence
The Cezanne algorithm
DNA damage response in yeast.